Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
4QNJ Chain:A ((10-191))
-IGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TESDPRR---------
General information:
TITO was launched using:
RESULT:
Template:
4QNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141131 for 1540 contacts (-91.6/contact) +
2D Compatibility (PS) -19203 + (NN) -7484 + (LL) 772
1D Compatibility (HY) -12000 + (ID) 3850
Total energy: -182896.0 ( -118.76 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_4QNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QNJ-query.scw
PDB file :
Tito_Scwrl_4QNJ.pdb
: