Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
1OKR Chain:A ((4-121))
---KTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILN-----
General information:
TITO was launched using:
RESULT:
Template:
1OKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41432 for 709 contacts (-58.4/contact) +
2D Compatibility (PS) -12710 + (NN) -6698 + (LL) 408
1D Compatibility (HY) -13200 + (ID) 3600
Total energy: -77232.0 ( -108.93 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_1OKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKR-query.scw
PDB file :
Tito_Scwrl_1OKR.pdb
: