Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPKHAKVIKSDPFIGLYLLQSAPSEYVYTLRDLDKDALIRPMASIGANQATEARLLVGQKGYDRYAQISQKTQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEERHKRLVVAQFDPFFPKNPFLKNDEILAINDYKIHSLAEFEWVVSNLSYQSLAKVKIKRNHQIKEVTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNHKSVSFNPKALREALSTPKIELLVWRQGFEFYIKVR |
| 4YNN Chain:A ((301-345)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DVIVQINDTKITQATQVKTTISLLRAGSTAKIKILRDN--KPLTLDVEVTDIKKHEQKLQSNNPFLYGLALRNFEQESPPHGNVVGVQVVGASETSAGWRAGLRPGDIIISANKTPVKDIKSLQAVAHEKGKQL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YNN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19351 for 236 contacts (-82.0/contact) +
2D Compatibility (PS) -4694 + (NN) 800 + (LL) 14128
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -12467.0 ( -52.83 by residue)
QMean score : 0.577
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