Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMNVESFNLDHTKVKAPYVR-IADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV
1YCL Chain:A ((3-149))
----VESFELDHNAVVAPYVRHCGVHKVGTDG-VVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGAQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVF
General information:
TITO was launched using:
RESULT:
Template:
1YCL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62310 for 1005 contacts (-62.0/contact) +
2D Compatibility (PS) -14631 + (NN) -3949 + (LL) 324
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -95266.0 ( -94.79 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_1YCL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCL-query.scw
PDB file :
Tito_Scwrl_1YCL.pdb
: