Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METIEWNEEQRKAFQDLLREFVALID-AKVQEKKQMGKKPKIPKYASCQNGLNKFLAPWGYACKISLGTGLLSHEPSIAFCRQDILGEGFVNGEKPTPTKGFYLWFAYYWRNDLEKIDLCIGRSDEEDKKEECQKCLAYDKIIPNRNECYREL
3SSC Chain:A ((3-86))
------------SIQPWIEKFIKQAQQQRSQ-----STKDYPTSYR-------------NLRVKLSFGYGNFTSIPWFAFLGE-----------GQEASNGIYPVILYY--KDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGV
General information:
TITO was launched using:
RESULT:
Template:
3SSC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43970 for 541 contacts (-81.3/contact) +
2D Compatibility (PS) -8825 + (NN) -4569 + (LL) 2820
1D Compatibility (HY) -6800 + (ID) 1050
Total energy: -62394.0 ( -115.33 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_3SSC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SSC-query.scw
PDB file :
Tito_Scwrl_3SSC.pdb
: