Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEFYQVYDPLGHIWLSALVALSPIALFFISLIVFKLKGYSAGFLSLALSILIALFVYKMPVQMVSASFFYGFLYGLWPIAWIVIAAIFLYNLSVKSGYFEILKESILSLTPDHRILVILIGFCFGSFLEGAIGFGGPVAITAAILVGLGLNPLYAAGLCLIANTAPVAFGAVGIPITAMASVVGIPELEISQMVGRVLPIFSIGIPFFIVFLMDGFRGIRETFPAVAVTGFSFAIAQFLSSNYLGPQLPDIISALVSLVATTLFLKFWQPKHIFTSNGKEPTISTEKHHICKVVVAWMPFVLLTITIIIWTQPWFKALFKEGGALAFSNFAFEFNSISQKIFKTVPIVTEATNFPVVFKLPLILTTGTSIFLAALLSVFLLRVKISDAIGVFGATLKEMRLPILTIGVVLAFAYVANYSGMSATLALALADTGHVFTFLSPMVGWLGVFLTGSDTSSNLLFGSLQMLIATQLGL-PEVLFLAANTSGGVVGKMISPQSIAIACAAVGLVGKESELFRFTVKYSIALAIIMGIVFTLIAYVFPFIIPVTPT |
1VLB Chain:A ((398-446)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIAPGVGLEPDQLVLVANPMGGTFGYKFSPTSEALVAVAAMATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAME |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VLB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20749 for 223 contacts (-93.0/contact) +
2D Compatibility (PS) -4944 + (NN) -1491 + (LL) 39248
1D Compatibility (HY) -1200 + (ID) 950
Total energy: 9914.0 ( 44.46 by residue)
QMean score : 0.144
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