Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
2K9J Chain:B ((695-717))
-----VVLLSVMGAILLIGLAALLIWKL----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2K9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12347 for 82 contacts (-150.6/contact) +
2D Compatibility (PS) -2406 + (NN) -2612 + (LL) 3248
1D Compatibility (HY) -2400 + (ID) 100
Total energy: -16617.0 ( -202.65 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_2K9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K9J-query.scw
PDB file :
Tito_Scwrl_2K9J.pdb
: