Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKEGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKR-ASSKEG-NLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKSEVENLKLSLEDLEFALIDYGLEELEEVGDKIIIRGDYNSFKL--LNEGFESLR-------LPIIKAGLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTNIE
4F3Q Chain:A ((14-241))
--------KHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGA-----DNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDG-NLGTEGSVAYLFKQRGLI-TFPPNSDEEKIM----EIAL---------EVGAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNAD
General information:
TITO was launched using:
RESULT:
Template:
4F3Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70723 for 1496 contacts (-47.3/contact) +
2D Compatibility (PS) -23698 + (NN) -14561 + (LL) 1988
1D Compatibility (HY) -12000 + (ID) 4000
Total energy: -122994.0 ( -82.22 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_4F3Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F3Q-query.scw
PDB file :
Tito_Scwrl_4F3Q.pdb
: