Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA--NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEA-TQNAPFMATCAKVI-DEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRD-FDAKRQT---PLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQS-ESMGIDTKEDLQNALKIFSPNLLKR
3K8E Chain:C ((4-241))
VVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGY-RAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA---------
General information:
TITO was launched using:
RESULT:
Template:
3K8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146850 for 1818 contacts (-80.8/contact) +
2D Compatibility (PS) -24457 + (NN) -8269 + (LL) 436
1D Compatibility (HY) -16800 + (ID) 4600
Total energy: -200540.0 ( -110.31 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_3K8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K8E-query.scw
PDB file :
Tito_Scwrl_3K8E.pdb
: