Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEKLVIGSRGSELALWQANHIKERL-KKECSMESEIRIVKTTGDKILDAPLNKIGGKGLFTKELEELLLKGAIDLAVHSLKDVPVVFEKGLDLACITKRADVRDTFLSVKFPDLMSLPKGAKVGTTSLRRSMQIKFKRKDLDTESLRGNVQTRLKKLECGEFDAIILAEAGLCRLNVQGAKYRKAFSVKEMIPSMGQGALGVE-MLKNHKHFITLQKLNNEESAFCCHLEREFIKGLNGGCQIPIGVHANLMGDEVKIRAVLGLPNGKEVIAKEKQGDKTKAFDLVQELLEEFLQSGAKEILEKAQLF |
1PDA Chain:A ((6-303)) | ---LRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVI---------GKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLE-SRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGACQVPIGSYAELIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILAEVY-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102755 for 2445 contacts (-42.0/contact) +
2D Compatibility (PS) -30946 + (NN) -15810 + (LL) 668
1D Compatibility (HY) -20000 + (ID) 6650
Total energy: -175493.0 ( -71.78 by residue)
QMean score : 0.426
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