Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHN--HYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL
1ZNY Chain:A ((21-198))
-----RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG----------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70781 for 1236 contacts (-57.3/contact) +
2D Compatibility (PS) -19659 + (NN) -11385 + (LL) 2220
1D Compatibility (HY) -12800 + (ID) 3550
Total energy: -115955.0 ( -93.81 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_1ZNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZNY-query.scw
PDB file :
Tito_Scwrl_1ZNY.pdb
: