Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGKIFSSPIYINPPFGYTNQPNFYNATIILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDIDIIAFNQVILRQNDLTLPHPKWSERDSVLVPLTLQQILFKREEW
4CWB Chain:A ((9-131))
--------------------------LGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERW--GPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRS
General information:
TITO was launched using:
RESULT:
Template:
4CWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80439 for 900 contacts (-89.4/contact) +
2D Compatibility (PS) -13122 + (NN) -7959 + (LL) 2300
1D Compatibility (HY) -11200 + (ID) 2200
Total energy: -112620.0 ( -125.13 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_4CWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CWB-query.scw
PDB file :
Tito_Scwrl_4CWB.pdb
: