Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIEHRQNEVVKKYQAKLISHDMKMF-VWCKECQESDD
4RB1 Chain:A ((4-135))
----------VSRIEQRLIDKGLKVTDQRRVIAQVLSDSADHPDVEEVYRRATAKDPRISIATVYRTVRLFEEESILERHDFGDGRARYEEAPSEHHDHLIDVNSARVIEFTSPEIEALQREIARKHGFRLVGHRLELYGVP---------
General information:
TITO was launched using:
RESULT:
Template:
4RB1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41720 for 846 contacts (-49.3/contact) +
2D Compatibility (PS) -13695 + (NN) 1987 + (LL) 1520
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -60508.0 ( -71.52 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_4RB1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RB1-query.scw
PDB file :
Tito_Scwrl_4RB1.pdb
: