Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVGVYGASGRIGKLLLEELKGGYKGLELSSVFVRQKCE---TDFSSFSHAP----LVTNDLKAFVKACECVVDFSLPKGVDHLLDVLLECPKILVSGTTGLEKETLEKMQKLALKAPLLHAHNMSIGIMMLNQLAFLTSLKLKD-ADIEIVETHHNLKKDAPSGTALSLYETCTKARGYDEKNALITHREGL---RSKESIGIATLRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLKDKAAKKYEISEMFG
1ARZ Chain:A ((6-268))
IRVAIAGAGGRMGRQLIQAALA-LEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLD
General information:
TITO was launched using:
RESULT:
Template:
1ARZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155456 for 2030 contacts (-76.6/contact) +
2D Compatibility (PS) -26694 + (NN) -7472 + (LL) -172
1D Compatibility (HY) -10000 + (ID) 4150
Total energy: -203944.0 ( -100.47 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1ARZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ARZ-query.scw
PDB file :
Tito_Scwrl_1ARZ.pdb
: