Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLEI---VVETILSAIKSSSKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTAKERVLGR-------------------------SRGADDNERVFHNRMRVFLDPLVEIQNFYKAKHLHKIINGERSIEEIVNEMQKYILSFAN
4NTZ Chain:A ((8-216))
----LLIMGLPGAGKGTQAAKIVEQFH--VAHISTGDMFRAAMANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQDDIKETGFLL-DGYPRTIEQAHALDKTL-AELGIELEGIINIEVNPDSLLERLSGRIIHRVTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPIIAHYRAKGLVHDIEGNQDINDVFSDIEKVLTNLK-
General information:
TITO was launched using:
RESULT:
Template:
4NTZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51142 for 1326 contacts (-38.6/contact) +
2D Compatibility (PS) -20353 + (NN) -14253 + (LL) 992
1D Compatibility (HY) -12800 + (ID) 3400
Total energy: -100956.0 ( -76.14 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_4NTZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NTZ-query.scw
PDB file :
Tito_Scwrl_4NTZ.pdb
: