Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLIINGAKAFGHSGGKLNETLTHHAKKILESLGLEVDTTIVDKGYEKSQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVMKNPQVEQYLNSLTVHLRQAFGK
4S24 Chain:A ((7-193))
---VLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRT---ATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVNS
General information:
TITO was launched using:
RESULT:
Template:
4S24.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100868 for 1392 contacts (-72.5/contact) +
2D Compatibility (PS) -19984 + (NN) -10489 + (LL) 348
1D Compatibility (HY) -20800 + (ID) 5600
Total energy: -157393.0 ( -113.07 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_4S24.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4S24-query.scw
PDB file :
Tito_Scwrl_4S24.pdb
: