Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRSLAFCLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKTKGLSAEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK
1YF3 Chain:A ((40-96))
-------------------------------LNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKV------IKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINYKGNFTTPFGKRTINKNSEKRFNH
General information:
TITO was launched using:
RESULT:
Template:
1YF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1005 for 239 contacts (-4.2/contact) +
2D Compatibility (PS) -6096 + (NN) -1835 + (LL) 3360
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -10626.0 ( -44.46 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_1YF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YF3-query.scw
PDB file :
Tito_Scwrl_1YF3.pdb
: