Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVIIAANNLCLQYQQNEPVIKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDL------KVFSGKLEVCNINMNNASKSTILDLRKNIGVVFQDYKLIQDYTIEQNIKLPMVICGIKKEECHLQLEKLLGHIDLRHKANRYPKELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQLNATIVVVTHKFPKNFSAYHRKFYIEEGEVYEYS
2PCJ Chain:A ((2-217))
-AEILRAENIKKVIRGYE-ILKGISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAPTEGKVF---LEGKEVDYTNEKELSLLRNRK-LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN-EGGTSIVMVTHE-RELAELTHRTLEMKDGKVVGEI
General information:
TITO was launched using:
RESULT:
Template:
2PCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117681 for 1675 contacts (-70.3/contact) +
2D Compatibility (PS) -22520 + (NN) -5940 + (LL) 136
1D Compatibility (HY) -15200 + (ID) 4400
Total energy: -165605.0 ( -98.87 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_2PCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PCJ-query.scw
PDB file :
Tito_Scwrl_2PCJ.pdb
: