Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGLFVAPVLAILGAISADEMEKKRDDAKAYYSQVEVAVKKADVVIDNLQ-AVKKMADLFTRQITKFDALFFLLSQDAIATMKKHHYDTSRYN-QKEKDQLCVTVSTLFSLSAFLKAPIMDKHQKLNKKAQKALNLMRDQMDSLENGNYSLDGIRFRQAQLKDLRDDKTS
2PGH Chain:A ((47-137))
-------------------NLSHGSDQVKAHGQKVADALTKAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHHPDDFNPSVHASLDKFLANVSTVLTSKYR--------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PGH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22236 for 488 contacts (-45.6/contact) +
2D Compatibility (PS) -9377 + (NN) -4206 + (LL) 5696
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: -34123.0 ( -69.92 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_2PGH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PGH-query.scw
PDB file :
Tito_Scwrl_2PGH.pdb
: