Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEVRFFGPIKE---------ENFFIKANGLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLDMPLKDGDVISLLPPVCGG
1FMA Chain:D ((1-81))
MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLV-SFDHPLTDGDEVAFFPPVTGG
General information:
TITO was launched using:
RESULT:
Template:
1FMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27642 for 464 contacts (-59.6/contact) +
2D Compatibility (PS) -7822 + (NN) -1071 + (LL) -76
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: -40611.0 ( -87.52 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_1FMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FMA-query.scw
PDB file :
Tito_Scwrl_1FMA.pdb
: