Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETCDFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQARDDKSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAEFILSAKRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPLNIGHGHGPLNLWSIKKHV
1UB0 Chain:A ((18-258))
--------------------VQADLKVFFRFGVYGTSALTLVTAQNTLGVQRVHLLPPEVVYAQIESVAQDFPLHAAKTGALGDAAIVEAVAEAVRRFGVRPLVVDPVM---------AKEAAAALKERLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGPKAVLLKGGHL------EAVDLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALKTAPSLGHGHGPLDHWA-----
General information:
TITO was launched using:
RESULT:
Template:
1UB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157822 for 1925 contacts (-82.0/contact) +
2D Compatibility (PS) -24781 + (NN) -8464 + (LL) 2096
1D Compatibility (HY) -11200 + (ID) 5300
Total energy: -205471.0 ( -106.74 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_1UB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UB0-query.scw
PDB file :
Tito_Scwrl_1UB0.pdb
: