Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEIKTLLVDFFPQAKHFGIILIKAIVVFCIGFYFSFFLRNKTMKLL-SKK-DEILANFVAQVTFILILIITTIIALSTLGVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNRSVANSNIINSNNTACRRIEWVCGVGYGSDIELVHKTIKDVIDGMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVRSELIERIKNALDANRIEIPFNKLDISINKQDSSK
5AJI Chain:A ((26-281))
----------------SYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVA-FLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGD-LQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVK---
General information:
TITO was launched using:
RESULT:
Template:
5AJI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155593 for 1638 contacts (-95.0/contact) +
2D Compatibility (PS) -26275 + (NN) -6109 + (LL) 1232
1D Compatibility (HY) -29200 + (ID) 4250
Total energy: -220195.0 ( -134.43 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_5AJI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AJI-query.scw
PDB file :
Tito_Scwrl_5AJI.pdb
: