Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENVYHKSLPKPLIYDLGCSTGNFFIALNQQIQQDIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVKFKE-----ASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIA--FKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
3DTN Chain:A ((11-226))
-----------------DAVSGKYDEQRRKFIPCFDDFYGVSVS-IASVDTEN--------PDILDLGAGTG-LLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSI----HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGY----LDKDI---EMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT
General information:
TITO was launched using:
RESULT:
Template:
3DTN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107131 for 1577 contacts (-67.9/contact) +
2D Compatibility (PS) -22036 + (NN) -6191 + (LL) 2804
1D Compatibility (HY) -12400 + (ID) 2500
Total energy: -147454.0 ( -93.50 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3DTN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DTN-query.scw
PDB file :
Tito_Scwrl_3DTN.pdb
: