Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAIL--------------------SREGKLKGVDYS------HCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
1KEK Chain:A ((688-763))
---------------------------------------------------------CIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPKEKALVMQPLDTQRDAQVPNLEYAARIPVK
General information:
TITO was launched using:
RESULT:
Template:
1KEK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27331 for 249 contacts (-109.8/contact) +
2D Compatibility (PS) -5318 + (NN) -3207 + (LL) 3960
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -39446.0 ( -158.42 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_1KEK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KEK-query.scw
PDB file :
Tito_Scwrl_1KEK.pdb
: