Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPHINAKIGDFYPQCLLCGDPLRVSYIAKNFLQDAKEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIVMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKIGNVFSSDFFYSFETHAFGLMAQYNHLAIEMEAAGLYATAMELNAKALCLCSVSDHLITKEALSPKERIESFDNMITLALEMMS
1PR4 Chain:A ((3-231))
-TPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHI-----TTAAERQTTFNDMIKIALESVL
General information:
TITO was launched using:
RESULT:
Template:
1PR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189261 for 1936 contacts (-97.8/contact) +
2D Compatibility (PS) -23382 + (NN) -4826 + (LL) 776
1D Compatibility (HY) -24400 + (ID) 6100
Total energy: -247193.0 ( -127.68 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1PR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PR4-query.scw
PDB file :
Tito_Scwrl_1PR4.pdb
: