Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG-KVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
3U4M Chain:A ((6-228))
------KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS-----
General information:
TITO was launched using:
RESULT:
Template:
3U4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118926 for 1793 contacts (-66.3/contact) +
2D Compatibility (PS) -24117 + (NN) -12670 + (LL) 1420
1D Compatibility (HY) -17600 + (ID) 5500
Total energy: -177393.0 ( -98.94 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_3U4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U4M-query.scw
PDB file :
Tito_Scwrl_3U4M.pdb
: