Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVEIENLTKTYGSLKALDNISLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEV-----KILNQKIGIETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFSDFDESKA-----LNLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEAAYKERLK
1JI0 Chain:A ((5-226))
IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLGVA--
General information:
TITO was launched using:
RESULT:
Template:
1JI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130532 for 1690 contacts (-77.2/contact) +
2D Compatibility (PS) -22607 + (NN) -5785 + (LL) 128
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -175846.0 ( -104.05 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1JI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JI0-query.scw
PDB file :
Tito_Scwrl_1JI0.pdb
: