Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLLEN------PPNHINNIESLENEISHRLDTHDLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKC
1V7U Chain:A ((19-239))
-----RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQID-----EEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR---------
General information:
TITO was launched using:
RESULT:
Template:
1V7U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101997 for 1670 contacts (-61.1/contact) +
2D Compatibility (PS) -22865 + (NN) -9802 + (LL) 1424
1D Compatibility (HY) -14800 + (ID) 4800
Total energy: -152840.0 ( -91.52 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1V7U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V7U-query.scw
PDB file :
Tito_Scwrl_1V7U.pdb
: