Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKIIGSLIKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE |
2KYB Chain:A ((10-55)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------SSLNVRSSASTSSKVIGSLSGNTKVTIVGEEGAFYKIEYKG-SHGYVAKEYI---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KYB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9537 for 245 contacts (-38.9/contact) +
2D Compatibility (PS) -4762 + (NN) 12 + (LL) 13036
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -6151.0 ( -25.11 by residue)
QMean score : 0.192
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