Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIAKTAIISPKAEIGKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFIGKNTEIFPFAVLGTQPQDLKYKGEYSELMVGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQLLESKD-IDFIHALYKRLFRP-IPSLRESAKLELEEHANNPFVKEICSFILESSRGVAYKSSEYSSEEKQEE
4E6T Chain:A ((39-292))
---IHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVMASGNPAHAFGINIEGMRRKGWSKNTIQGLREAYKLIFKSGLTSVQAIDQIKSEILPSVPEAQLLIDSLEQSERGIVR-------------
General information:
TITO was launched using:
RESULT:
Template:
4E6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -227224 for 2216 contacts (-102.5/contact) +
2D Compatibility (PS) -26993 + (NN) -4704 + (LL) 1020
1D Compatibility (HY) -16400 + (ID) 5450
Total energy: -279751.0 ( -126.24 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4E6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E6T-query.scw
PDB file :
Tito_Scwrl_4E6T.pdb
: