Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAGIIGLGLMGGSLGLALQEWGRFKSVIGYDHNALHAKLALTLGLVDE-CVEFEKI--LECDVIFLAIPVEGIIECLKKMTPI-KKSATIIDLGGAKAQILHNIPKSIRQNFIAAHPMCGTEFYGPKASVKGLYENALVILCDLEDSGTEQVEIAKEIFLGIKARLIKMKSNEHDTHVAYISHLPHVLSYALANSVLKQNDPEM-ILSLAGGGFRDMSRLSKSSPLMWKDIFKQNRDNVLEAIEKCEKEIAQAKAWIENNDYESLAEWMAQANKLQEFM
2G5C Chain:A ((6-274))
----IVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDF---AKSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRMEI
General information:
TITO was launched using:
RESULT:
Template:
2G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172916 for 1990 contacts (-86.9/contact) +
2D Compatibility (PS) -28068 + (NN) -10599 + (LL) 492
1D Compatibility (HY) -21600 + (ID) 4250
Total energy: -236941.0 ( -119.07 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_2G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2G5C-query.scw
PDB file :
Tito_Scwrl_2G5C.pdb
: