Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALCQGFALVFVPRSDCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
1D6T Chain:A ((9-117))
------------------IKKNADFQRIYKKGHSVANRQFVVYTCN-----NKEIDHFR---------------LGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQ-NSLEHVLKIAKVFNKKIK-------------
General information:
TITO was launched using:
RESULT:
Template:
1D6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76079 for 852 contacts (-89.3/contact) +
2D Compatibility (PS) -11645 + (NN) -4761 + (LL) 2288
1D Compatibility (HY) -7600 + (ID) 1800
Total energy: -99597.0 ( -116.90 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1D6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D6T-query.scw
PDB file :
Tito_Scwrl_1D6T.pdb
: