Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISKV
1GN8 Chain:A ((1-151))
MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAK
General information:
TITO was launched using:
RESULT:
Template:
1GN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104225 for 1170 contacts (-89.1/contact) +
2D Compatibility (PS) -15883 + (NN) -3027 + (LL) 0
1D Compatibility (HY) -16000 + (ID) 3700
Total energy: -142835.0 ( -122.08 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1GN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GN8-query.scw
PDB file :
Tito_Scwrl_1GN8.pdb
: