Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYQMKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVSWPVG---GELK---PDG-EHWTFTAEAINIATTFLKSEGIELTPVKMIIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLV---VQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSAIKENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGIKHLPFHTGRVQITE |
| 1KKH Chain:A ((8-288)) | ---------IETPSKVILFGEHAVV-YGYRAISMAIDLTSTIEIKETQEDEIILNL--NDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIE--PKTGFKINISSKI----PISCGLGSSASITIGTIKAV-SGFYNK--ELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKN-----NKFRKIKGEFEEFLKNCKFLI-------------VYAEKRKKKTAELVNEVAKIENKD----EIF----KEIDKVIDEALKIKNKEDFGKLMTKNHELLKKL------NISTPKLDRIVDIGNRFGFGAKLTGAGGGGCVI----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143591 for 2294 contacts (-62.6/contact) +
2D Compatibility (PS) -29711 + (NN) -13120 + (LL) 6564
1D Compatibility (HY) -17200 + (ID) 4050
Total energy: -201108.0 ( -87.67 by residue)
QMean score : 0.493
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