Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQNNKSNAAHAEGGIPWKHIVGFALSVVLTLLAVWVALYSTLTTNVKVVIIFIFAFIQAALQLLMFMHMTEGRDGKIQIGNILFAAFIAIVVVIGSYWVMEIGHMNHLL
4XPG Chain:A ((162-223))
----NRSEGIHDLGAIKWDM----ALCLLIVYLICYFSLWKGISTSGKVV-WFTALFPYAALLILLIRGLT---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4XPG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22530 for 264 contacts (-85.3/contact) +
2D Compatibility (PS) -6565 + (NN) -4180 + (LL) 4400
1D Compatibility (HY) -8000 + (ID) 1050
Total energy: -37925.0 ( -143.66 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_4XPG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XPG-query.scw
PDB file :
Tito_Scwrl_4XPG.pdb
: