Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LEKKKKFRLFDAVLMAVCVVLVVESAAPAAAIGSSQFFWWIALLILFFLPYGLVSAELGTTYDDEGGIYDWVKRAFGRKWGARVAWLYWINYPIWMASLAVLFVEVITQIFPVSFGTPVSILIQLIFVWIVVIVSCYPVSDSKWILNIAAFCKVAIML---CLGVLGIYFAITKGLANDFSGKALLPTFDLESL-------SFISVILFNFLGFEVVTTLASDMENPKKQIPQAIIYGGILIAFFYLLAAFGMGAAIPTSELSTSGG-LIDSFIMLIGGVNPFVIIIGIMFMYTLVANLVSWALGVNYVAMYAAKNKDLPAVFGKTNPKNDMPTGTSILNGIVASVLIVAAPLIPNENIFWAFFALNVVALLGSYILMFPAFLKLRKLDPDRERPFKVPGGKILLYLMTFVPMILLIITLIFSAVPLNGSSAELNEKIPILIGTIVAVIVGEICIWLAGKRKDKGEIKNEND |
| 3OB6 Chain:A ((36-385)) | -----------------------------ASTGGIAIYGWL-VTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLN---IVGPKMITRVQAVATVLALIPIVGIAVFGWFW---------FRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALG--DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSS-ISP-----GLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARP----------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OB6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -335196 for 2765 contacts (-121.2/contact) +
2D Compatibility (PS) -34650 + (NN) -16045 + (LL) 10212
1D Compatibility (HY) -26800 + (ID) 4150
Total energy: -406629.0 ( -147.06 by residue)
QMean score : 0.313
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