Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNYNILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE |
2H3O Chain:A ((57-70)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTIYAIQRKRQADA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2H3O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1439 for 50 contacts (28.8/contact) +
2D Compatibility (PS) -1522 + (NN) -1003 + (LL) 17152
1D Compatibility (HY) 0 + (ID) 0
Total energy: 16066.0 ( 321.32 by residue)
QMean score : -0.248
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