Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEINDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIKEEA
2YKR Chain:F ((2-91))
--RHYEIVFMVHPD-QSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQ-EVIDELETTFRFNDAVIRSMVMR---
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30182 for 705 contacts (-42.8/contact) +
2D Compatibility (PS) -9637 + (NN) -3324 + (LL) 1052
1D Compatibility (HY) -9600 + (ID) 1300
Total energy: -52991.0 ( -75.16 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: