Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGQIRMSPSELRDRAKTYGQSGRDIEDILSRLSQLQEQLRSEWEGQAFMRFDDQFEQLKPKVTEFANLMDQINDQLEKTANAVEEHDQQLSQNFGF
3GVM Chain:A ((4-92))
---QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIA-----
General information:
TITO was launched using:
RESULT:
Template:
3GVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2291 for 502 contacts (-4.6/contact) +
2D Compatibility (PS) -9517 + (NN) 14 + (LL) 140
1D Compatibility (HY) -8000 + (ID) 1700
Total energy: -21354.0 ( -42.54 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_3GVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVM-query.scw
PDB file :
Tito_Scwrl_3GVM.pdb
: