Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVF------DSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEA---------GAYT-NSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALMPLFGIRVK
2XTY Chain:A ((30-212))
--------------------------------------------FSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFM---FCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGV-----DLQGVKLDNYQASLLMERLGIAV-
General information:
TITO was launched using:
RESULT:
Template:
2XTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -193240 for 1244 contacts (-155.3/contact) +
2D Compatibility (PS) -16119 + (NN) 5787 + (LL) 3268
1D Compatibility (HY) -8400 + (ID) 2450
Total energy: -211154.0 ( -169.74 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_2XTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XTY-query.scw
PDB file :
Tito_Scwrl_2XTY.pdb
: