Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLTGYDQD----SLQQAIDQAID--------FETFFAEAPKM-NPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVDELAKGKKMEKILRK
3BM3 Chain:A ((183-253))
--------------------------------DEINFWFVGFDEEFTIYSAIAMLDNGIDRVYVIDGRYDSLIEEIKRISDPNFN--------------EDKYIQKIRRFSDIFDDI------------
General information:
TITO was launched using:
RESULT:
Template:
3BM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15968 for 266 contacts (-60.0/contact) +
2D Compatibility (PS) -6313 + (NN) -5297 + (LL) 5208
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -29420.0 ( -110.60 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_3BM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BM3-query.scw
PDB file :
Tito_Scwrl_3BM3.pdb
: