Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLR-DDSAVPRFPLSELEAV-----LADEELYLAFSEWF-SEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESH----RITVEMTE-DIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIH-FKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
3SY8 Chain:A ((155-381))
----EFEAYYQPKVALDGGGLIGAEVLARWNHPHLGVLPPSHFLYVMETYNLVDKLFWQLFSQGLATRRKLAQLGQPIN--LAFNVHPSQLGSRALAENISALLTEFHLPPSSVMFEITETGLISAP------------ASSLENLVRLWIMGCGLAMDDFGAGYSSLDRLCEFPFSQIKLDRTFVQKMKTQPRS--CAVISSVVALAQALGISLVVEGVESDEQRVRLIELGCSIAQGYLFARPMP-
General information:
TITO was launched using:
RESULT:
Template:
3SY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135159 for 1618 contacts (-83.5/contact) +
2D Compatibility (PS) -23117 + (NN) -11616 + (LL) 884
1D Compatibility (HY) -14400 + (ID) 3100
Total energy: -186508.0 ( -115.27 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3SY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SY8-query.scw
PDB file :
Tito_Scwrl_3SY8.pdb
: