Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVILKFGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRD--AVIFFYLANELISILENFVRMGMKVPEVLKNLILIFDAKSGEDEEKHDKDMD
4YY8 Chain:B ((42-80))
-----------------------------------------------------------------------------LLSGRHHVTRDKQGRIFLDRDSELFRIILNFLRNPLTIP--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13273 for 137 contacts (-96.9/contact) +
2D Compatibility (PS) -3507 + (NN) 2585 + (LL) 8716
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -9429.0 ( -68.82 by residue)
QMean score : 0.033
(partial model without unconserved sides chains):
PDB file :
Tito_4YY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YY8-query.scw
PDB file :
Tito_Scwrl_4YY8.pdb
: