Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPTKNHRLPKKHLPIRKSTTRFTKGVVTVSRIDIGEIQTFAYQLHTANEAARKSIKDIKNAVKNYTEDGSLKGKAIDASKNYYQMTYFPLCDAIIEAMNESEERLAQYIADFHAQVDSSADARIDADGLYELGKMIDRIEAKKEALAQRMNTGTEGQMQSYRSQLSIAYKQENILEKYLAFEQSHGGFFDNLTDLVRGIQQTIRELQSNIQFNSKTGTYDMSKLNFTTVTRMQNASGKALNDNAKTFNFDEYQKTYRGQMWVLMKNGIVDVEATNAYNAAVLGGEMPHESNEAQEEAELLQAVVQSVKEGTDPVTGQEISKAQGFGIISGLIFRYTAGGYKGKKFKIPRDWLHRRKKNNGVEVGTDFGKIGKLVNHPNIKINWSEYAEHGMSRLKQRGLSKSQVDDFVEHGKVLSQNEGEKFAFITEDGVAIVSKDGKLVTAWGKKDFDEGMKKIIGKLYGK |
3GHG Chain:B ((86-191)) | -------LLQQERPIRNSVDELNNNVEAVSQTSSSSFQ-YMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLE---SDVSAQME--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GHG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 12032 for 453 contacts (26.6/contact) +
2D Compatibility (PS) -10864 + (NN) 2725 + (LL) 21756
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: 19499.0 ( 43.04 by residue)
QMean score : 0.125
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