Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNIVIALIPAVMWGIMPLVVSKIGGKPRQQIIGTTFGALAFAIGVFIFTNPEYTATIIIASFVSGAFWSLGQMNQFRAFTQVGVSKTMPLSTGMQLVGTSLFGVFAFHEWGTTSKLVLGFSALALIIIGIFLTSYQQHKDENSGQNMKKGIITLLISSVGYVGYVVITRWFDISGWDAILPQAIGMVVAGLLFSIKSEEKRFTKQTWLNMIPGVMWATGNLALLFSNKLVGIATGFSLSQMGVVISTIGGILFLGEKKTKKELILVIIGVVLVIIGGTMIGIAKS |
1KW3 Chain:B ((2-32)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------IERLGYLGFAVK----DVPAWDHFLTKSVGLMAAG----------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KW3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7790 for 111 contacts (-70.2/contact) +
2D Compatibility (PS) -3308 + (NN) 953 + (LL) 20548
1D Compatibility (HY) -4000 + (ID) 600
Total energy: 5803.0 ( 52.28 by residue)
QMean score : -0.204
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