Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVNSVIVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFG------WLDSYAGLIVPALFSV-FGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNY--GLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE
3FH6 Chain:G ((79-287))
-----------------------------------------------------------------------FPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEV--PVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVN---------
General information:
TITO was launched using:
RESULT:
Template:
3FH6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156286 for 1400 contacts (-111.6/contact) +
2D Compatibility (PS) -20613 + (NN) -6033 + (LL) 6464
1D Compatibility (HY) -19600 + (ID) 3200
Total energy: -199268.0 ( -142.33 by residue)
QMean score : 0.135
(partial model without unconserved sides chains):
PDB file :
Tito_3FH6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FH6-query.scw
PDB file :
Tito_Scwrl_3FH6.pdb
: