Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLFDTHVHLNDEAFDDDIEEVIKRAQENDVTRMAVVGFNKETIDRALELAEKYDFISLIVGWHPTDAITFTDEDLEWLRDLALTHPKVVALGEMGLDYHWDTSPKETQFEVFRKQIRLAKEVNLPIVIHNREATEDVVRILQEEHAEEVGGIMHCFGETVEVMEACLAMNFYISFGGTVTFKNAKLP-KIAAQAIPIDRLLIETDAPYLAP---TPN-RGKRNEPGYVKLVAEKIAELKEMKYSEIATHSTENAKRLFRIKD
4PE8 Chain:A ((1-258))
-MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELA-AQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGI--
General information:
TITO was launched using:
RESULT:
Template:
4PE8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160820 for 2235 contacts (-72.0/contact) +
2D Compatibility (PS) -27458 + (NN) -15919 + (LL) 340
1D Compatibility (HY) -14400 + (ID) 4350
Total energy: -222607.0 ( -99.60 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4PE8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PE8-query.scw
PDB file :
Tito_Scwrl_4PE8.pdb
: