Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADNRCSKVIVVCQEEERKHVKELMSQLNVAEHRIEIVKGGSERQYSVAAGLERCG-TGRVVLVHDGARPFITLDIIDRLLIGVEQSKAAICAVKVKDTVKRV-MNGVVQETVDRENLWQVQTPQAFELPILRKAHQLARKEQFLGTDEASLVERIPCPVAIVQGSYYNIKLTTPEDMPLAKAILGELGGIAND
2YC5 Chain:A ((7-225))
----VILLAG--------SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDV---DLSFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS--------
General information:
TITO was launched using:
RESULT:
Template:
2YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176551 for 1605 contacts (-110.0/contact) +
2D Compatibility (PS) -22416 + (NN) -3399 + (LL) 956
1D Compatibility (HY) -18800 + (ID) 3600
Total energy: -223810.0 ( -139.45 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_2YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YC5-query.scw
PDB file :
Tito_Scwrl_2YC5.pdb
: