Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITDLRKQLRDAGIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSNEDVVAPAKILNDFAKDHEALEIKAGVIEGKVASLEEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQKEGQEA
4V19 Chain:J ((112-196))
----------------------------------------LRHQLRKHKILMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKV---KEMVRILKGIPFLPLLGGCIDDTILSRQGFINYSK--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4V19.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29907 for 498 contacts (-60.1/contact) +
2D Compatibility (PS) -8977 + (NN) 418 + (LL) 6464
1D Compatibility (HY) -8000 + (ID) 1100
Total energy: -41102.0 ( -82.53 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_4V19.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V19-query.scw
PDB file :
Tito_Scwrl_4V19.pdb
: