Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDEKEKNLNENSENESTPKREVEDTLHTPESAQPVQETPIVEGVTPEGEKFAGATEDAAEASSTNAFFEEASNKESEPARPAPGPRRAGTTGGGAVPPNRVNNGGSGNGNGEPPKRGKHFIGYFLTALIGVIIGGLIIFFVAWDNGDNADTTSNSNNKATKVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKANGKAYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFGDSDSLKLGEPAIAIGSPLGTEFSG--SVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTDAAINPGNSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVERPSLGVSLRDVDTIPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVELNGQKVTNSMTLRKILYGNDVKIGDKVKVKYYRDGKEKS-----TDIKLEAAKTTT |
3PV2 Chain:A ((65-342)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIGSGVIIDPNNG--VIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLV-IGDSDKLEVGDFVVAIGNPFGL----SQSATFGIVSALK-------------NF----IQTDAAINPGNSGGALVNAKGELIGINTAIL----V-GIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLT--PELAQA--MGYPEDFQ-GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTI--SLLRVGSTVKIIVERDNKPLTLSAVVTDIK-------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -86534 for 1985 contacts (-43.6/contact) +
2D Compatibility (PS) -26794 + (NN) -1814 + (LL) 9864
1D Compatibility (HY) -22800 + (ID) 5600
Total energy: -133678.0 ( -67.34 by residue)
QMean score : 0.533
|
|
|